Bioinformatics

Use of wavelet and fast Fourier transforms in pharmacodynamics.
[17142645] J Pharmacol Exp Ther 321(2): 423-30 (2007)

Biomolecular simulation and modelling: status, progress and prospects.
[18611844] J R Soc Interface 5 Suppl 3(-): S173-90 (2008)

Approaches to biosimulation of cellular processes.
[19669467] J Biol Phys 32(3-4): 273-88 (2006)

Literature Lab: a method of automated literature interrogation to infer biology from microarray analysis.
[18088408] BMC Genomics 8(-): 461 (2007)

Computational advances in maximum likelihood methods for molecular phylogeny.
[9521926] Genome Res 8(3): 222-33 (1998)

Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets.
[19915012] Plant Physiol 152(2): 460-9 (2010)

Systems biology in immunology: a computational modeling perspective.
[21219182] Annu Rev Immunol 29(-): 527-85 (2011)

Promise and challenge of high-performance computing, with examples from molecular modelling.
[12804267] Philos Transact A Math Phys Eng Sci 360(1795): 1079-105 (2002)

Computational challenges in atomic, molecular and optical physics.
[12804270] Philos Transact A Math Phys Eng Sci 360(1795): 1135-47 (2002)

New challenges in quantum chemistry: Quests for accurate calculations for large molecular systems.
[12804271] Philos Transact A Math Phys Eng Sci 360(1795): 1149-64 (2002)

Towards model-based control of Parkinson's disease.
[20368246] Philos Transact A Math Phys Eng Sci 368(1918): 2269-308 (2010)

Bioinformatics and molecular modeling in glycobiology.
[20364395] Cell Mol Life Sci 67(16): 2749-72 (2010)

From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase.
[20043185] Cell Mol Life Sci 67(7): 1049-64 (2010)

Mathematical models in mammalian cell biology.
[18638360] Genome Biol 9(7): 316 (2008)

Expression-based in silico screening of candidate therapeutic compounds for lung adenocarcinoma.
[21283735] PLoS One 6(1): e14573 (2011)

Multiple imputations applied to the DREAM3 phosphoproteomics challenge: a winning strategy.
[20090915] PLoS One 5(1): e8012 (2010)

Towards a rigorous assessment of systems biology models: the DREAM3 challenges.
[20186320] PLoS One 5(2): e9202 (2010)

Statistical significance in biological sequence analysis.
[16761361] Brief Bioinform 7(1): 2-24 (2006)

Open source tools and toolkits for bioinformatics: significance, and where are we?
[16899494] Brief Bioinform 7(3): 287-96 (2006)

The Bio* toolkits--a brief overview.
[12230038] Brief Bioinform 3(3): 296-302 (2002)

Tools and collaborative environments for bioinformatics research.
[21984743] Brief Bioinform 12(6): 549-61 (2011)

Experience using web services for biological sequence analysis.
[18621748] Brief Bioinform 9(6): 493-505 (2008)

Identification of replication origins in prokaryotic genomes.
[18660512] Brief Bioinform 9(5): 376-91 (2008)

Building successful biological databases.
[15153301] Brief Bioinform 5(1): 4-5 (2004)

Analysis for free: comparing programs for sequence analysis.
[15153308] Brief Bioinform 5(1): 82-7 (2004)

Biological applications of support vector machines.
[15606969] Brief Bioinform 5(4): 328-38 (2004)

Advances in translational bioinformatics: computational approaches for the hunting of disease genes.
[20007728] Brief Bioinform 11(1): 96-110 (2010)

Evolving research trends in bioinformatics.
[17077138] Brief Bioinform 8(2): 88-95 (2007)

CytometryML, an XML format based on DICOM and FCS for analytical cytology data.
[12820121] Cytometry A 54(1): 56-65 (2003)

Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis.
[21901086] PLoS Comput Biol 7(8): e1002163 (2011)

Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis.
[21998558] PLoS Comput Biol 7(10): e1002132 (2011)

Pattern recognition software and techniques for biological image analysis.
[21124870] PLoS Comput Biol 6(11): e1000974 (2010)

Recent evolutions of multiple sequence alignment algorithms.
[17784778] PLoS Comput Biol 3(8): e123 (2007)

Introduction to computational proteomics.
[17676979] PLoS Comput Biol 3(7): e114 (2007)

A primer on python for life science researchers.
[18052533] PLoS Comput Biol 3(11): e199 (2007)

Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners.
[17465672] PLoS Comput Biol 3(4): e43 (2007)

Deciphering protein-protein interactions. Part I. Experimental techniques and databases.
[17397251] PLoS Comput Biol 3(3): e42 (2007)

Computational methods for protein identification from mass spectrometry data.
[18463710] PLoS Comput Biol 4(2): e12 (2008)

Support vector machines and kernels for computational biology.
[18974822] PLoS Comput Biol 4(10): e1000173 (2008)

Getting started in gene expression microarray analysis.
[19876380] PLoS Comput Biol 5(10): e1000543 (2009)

A systematic comparison and evaluation of biclustering methods for gene expression data.
[16500941] Bioinformatics 22(9): 1122-9 (2006)

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology.
[20671151] Bioinformatics 26(19): 2455-7 (2010)

Early bioinformatics: the birth of a discipline--a personal view.
[14630646] Bioinformatics 19(17): 2176-90 (2003)

Wavelets in bioinformatics and computational biology: state of art and perspectives.
[12499286] Bioinformatics 19(1): 2-9 (2003)

Comparisons and validation of statistical clustering techniques for microarray gene expression data.
[12611800] Bioinformatics 19(4): 459-66 (2003)

Alignment-free sequence comparison-a review.
[12611807] Bioinformatics 19(4): 513-23 (2003)

Biomarker detection in the integration of multiple multi-class genomic studies.
[19965884] Bioinformatics 26(3): 333-40 (2010)

Bioinformatics challenges for genome-wide association studies.
[20053841] Bioinformatics 26(4): 445-55 (2010)

Bayesian rule learning for biomedical data mining.
[20080512] Bioinformatics 26(5): 668-75 (2010)

Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions.
[17510165] Bioinformatics 23(15): 1909-18 (2007)

Tools for visually exploring biological networks.
[17720984] Bioinformatics 23(20): 2651-9 (2007)

A review of feature selection techniques in bioinformatics.
[17720704] Bioinformatics 23(19): 2507-17 (2007)

Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.
[17893084] Bioinformatics 23(21): 2945-6 (2007)

SNPchip: R classes and methods for SNP array data.
[17204461] Bioinformatics 23(5): 627-8 (2007)

IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis.
[19346322] Bioinformatics 25(11): 1449-50 (2009)

Eukaryotic transcription factor binding sites--modeling and integrative search methods.
[18426806] Bioinformatics 24(11): 1325-31 (2008)

An overview of the wcd EST clustering tool.
[18480101] Bioinformatics 24(13): 1542-6 (2008)

Successful anti-cancer drug targets able to pass FDA review demonstrate the identifiable signature distinct from the signatures of random genes and initially proposed targets.
[17925305] Bioinformatics 24(3): 389-95 (2008)

Informatics approaches to understanding TGFbeta pathway regulation.
[19855015] Development 136(22): 3729-40 (2009)

Current methodologies for translational bioinformatics.
[20470899] J Biomed Inform 43(3): 355-7 (2010)

What is biomedical informatics?
[19683067] J Biomed Inform 43(1): 104-10 (2010)

Construction and analysis of protein-protein interaction networks.
[20334628] Autom Exp 2(1): 2 (2010)

Towards Robot Scientists for autonomous scientific discovery.
[20119518] Autom Exp 2(-): 1 (2010)

Nanoinformatics: an emerging area of information technology at the intersection of bioinformatics, computational chemistry and nanobiotechnology.
[21720680] Biol Res 44(1): 43-51 (2011)

Molecular dynamics simulations and drug discovery.
[22035460] BMC Biol 9(-): 71 (2011)

Data pushing: a fly-centric guide to bioinformatics tools.
[18849648] Fly (Austin) 2(1): 1-18 (2008)

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